Index A | C | D | E | F | G | H | I | L | M | N | P | Q | R | S | T A aggregate_urna() (in module troutpy.pp) apply_exrnaH_to_cellular_to_create_cellularW() (in module troutpy.pl) assess_diffusion() (in module troutpy.tl) C calculate_target_cells() (in module troutpy.tl) celltype_communication() (in module troutpy.pl) cluster_distribution_from_source() (in module troutpy.tl) colocalization_proportion() (in module troutpy.tl) communication_strength() (in module troutpy.tl) compare_intra_extra_distribution() (in module troutpy.tl) compute_contribution_score() (in module troutpy.tl) compute_distant_cells_proportion() (in module troutpy.tl) compute_extracellular_counts() (in module troutpy.pp) compute_js_divergence() (in module troutpy.tl) compute_source_cells() (in module troutpy.tl) compute_source_score() (in module troutpy.tl) compute_target_score() (in module troutpy.tl) coupled_scatter() (in module troutpy.pl) create_grid_squares() (in module troutpy.pp) create_urna_metadata() (in module troutpy.tl) crosstab() (in module troutpy.pl) D define_target_by_celltype() (in module troutpy.tl) define_urna() (in module troutpy.pp) diffusion_results() (in module troutpy.pl) distance_to_source_cell() (in module troutpy.tl) distributions_by_cluster() (in module troutpy.pl) E extracellular_enrichment() (in module troutpy.tl) F factors_in_cells() (in module troutpy.pl) factors_to_cells() (in module troutpy.tl) filter_urna() (in module troutpy.pp) format_adata() (in module troutpy.pp) G gene_communication() (in module troutpy.pl) gene_distribution_from_source() (in module troutpy.pl) gene_metric_heatmap() (in module troutpy.pl) gene_specific_interactions() (in module troutpy.tl) genes_over_noise() (in module troutpy.pl) get_colormap() (in module troutpy.pl) get_gene_interaction_strength() (in module troutpy.tl) get_palette() (in module troutpy.pl) get_proportion_expressed_per_cell_type() (in module troutpy.tl) global_distribution_from_source() (in module troutpy.pl) H heatmap() (in module troutpy.pl) histogram() (in module troutpy.pl) I image_intensities_per_transcript() (in module troutpy.tl) in_out_correlation() (in module troutpy.tl) interactions_with_arrows() (in module troutpy.pl) intra_extra_density() (in module troutpy.pl) L latent_factor() (in module troutpy.tl) logfoldratio_over_noise() (in module troutpy.pl) M metric_scatter() (in module troutpy.pl) module troutpy.pl troutpy.pp troutpy.tl moranI_histogram() (in module troutpy.pl) N nmf_factors_exrna_cells_W() (in module troutpy.pl) nmf_gene_contributions() (in module troutpy.pl) P paired_nmf_factors() (in module troutpy.pl) pie() (in module troutpy.pl) Q quantify_overexpression() (in module troutpy.tl) R rank_factor_genes_loadings() (in module troutpy.pl) rank_factor_genes_loadings_matrixplot() (in module troutpy.pl) S segmentation_free_clustering() (in module troutpy.tl) sorted_heatmap() (in module troutpy.pl) source_score_by_celltype() (in module troutpy.pl) spatial_colocalization() (in module troutpy.tl) spatial_inout_expression() (in module troutpy.pl) spatial_interactions() (in module troutpy.pl) spatial_transcripts() (in module troutpy.pl) spatial_variability() (in module troutpy.tl) T target_score_by_celltype() (in module troutpy.pl) top_bottom_probes() (in module troutpy.pl) troutpy.pl module troutpy.pp module troutpy.tl module