troutpy.pl.factors_in_cells

troutpy.pl.factors_in_cells#

troutpy.pl.factors_in_cells(sdata, layer='table', method='matrixplot', celltype_key='cell_type', cmap='troutpy', **kwargs)#

Plot factors from a specified layer in a Scanpy AnnData object.

Parameters:

  • sdata (spatialdata.SpatialData) – The SpatialData object containing the data.

  • layer (str) – The layer from which to extract the factors (default: ‘table’).

  • method (str) – The plotting method (‘matrixplot’, ‘dotplot’, ‘violin’).

  • celltype_key (str) – The key in .obs to group by (default: ‘cell_type’).

  • title (str) – Title for the plot (default: ‘’).

  • kwargs (dict[str, Any]) – Additional keyword arguments passed to the plotting function.

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