troutpy.tl.gene_specific_interactions

troutpy.tl.gene_specific_interactions#

troutpy.tl.gene_specific_interactions(sdata, copy=False, gene_key='gene')#

Group the read-specific interaction scores into gene-specific scores

Parameters:

  • sdata (spatialdata.SpatialData) – A SpatialData object including precomputed communication strenghts for each exRNA

  • copy (bool) – Wether to save the resulting sdata as a copy

  • gene_key (str) – column in sdata[‘source_table’] containing gene assignment for each transcript

Returns:

sdata A 3D array of shape (num_categories, H, W) containing mean values per category.

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