troutpy.pl.rank_factor_genes_loadings

troutpy.pl.rank_factor_genes_loadings#

troutpy.pl.rank_factor_genes_loadings(sdata, layer, n_genes=20, fontsize=15, ncols=4, sharey=True, show=True, save=None, ax=None, **kwargs)#

Plot top scoring genesex for each factor from NMF/LDA.

Parameters:

  • sdata (spatialdata.SpatialData) – The SpatialData object containing the factorized data.

  • layer (str) – The layer name in sdata where the factorized results are stored.

  • n_genes (int) – Number of top genes to display per factor, by default 20.

  • fontsize (int) – Font size for gene names, by default 8.

  • ncols (int) – Number of panels per row, by default 4.

  • sharey (bool) – Whether to share y-axis scale across subplots, by default True.

  • show (bool) – Whether to show the plot, by default True.

  • save (str) – Path to save the figure, by default None.

Return type:

list[Axes] | None

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